Anytime you’re growing something, there’s always some problem that could go wrong.
Whether your goal is to grow a child, a vegetable garden, a goldfish or, you know, bacteria, living organisms are by nature dynamic. Sometimes they die. Sometimes they get sick. Sometimes they grow faster, or slower or…chunkier.
If you’ve made an odd batch of homemade yogurt, this is the “help line” to call!

Help, My Yogurt Turned Out…
- Chunky
- Cottage-cheesy
- Runny
- Lumpy
- Separated into whey plus thick cheesy weird stuff!
Honestly, for all these texture/consistency problems, you need to troubleshoot in the same way. Your problem might be:
- Temperature
- Be sure to incubate your yogurt only between 90-110F – over 116 or so kills the bacteria completely, but over 110 tends to hinder them and you get runny or cottage cheesy yogurt. I’ve found that about 100F makes the best thickness.
- A problem – you might start at the right temp, but if your pot of water is too hot, it can raise the temp of the cooler WAY too high. I learned that an electric stove, for some reason, holds the heat in the pot more. My yogurt at my in-laws was terrible for weeks! I finally figured out that I couldn’t boil it right before putting the jars in the cooler. I had to put the pot in the cooler while the jars were cooling and/or allow some “cool down” time to let the steam out. You might use an oven thermometer with a wire that comes out of the cooler so you can check the temp while the lid is closed, since opening the lid will alter the environment.
- Another problem – be aware of summer vs. winter temps. I learned I can’t get the cooler out of the way in the garage in the summer unless I take precautions and use warm, not boiling, water. It just got too toasty in there! On the other hand, you might be able to incubate without a cooler if you have a steamy garage at about 95F.
- If you have a problem over and over with texture and think it may be inconsistent incubation temps, you might try regulating it with a dehydrator just to see what happens – I’ve had good luck with my Excalibur dehydrator with all the trays out at 105F.
- Amount of starter
- Too little starter makes runny yogurt, but too much (more than 2 Tbs./quart for pasteurized or 2 1/2-3 Tbs. for raw yogurt) makes things separate into whey and thick cheese. Renee of MadeOn lotion says to spread that cheese on bread and broil, and your “oops” tastes like good mozzarella.

- Too little starter makes runny yogurt, but too much (more than 2 Tbs./quart for pasteurized or 2 1/2-3 Tbs. for raw yogurt) makes things separate into whey and thick cheese. Renee of MadeOn lotion says to spread that cheese on bread and broil, and your “oops” tastes like good mozzarella.
- Quality of starter
- If you’ve been using the same yogurt to restart your new batches, sometimes it just starts to wear out. I used to buy a new starter every month or two, then I got better at consistency and could go 6 months. Sometimes if you get frustrated with the thickness of your yogurt, it’s worth spending a few bucks to start over, or try a powdered starter from your local health foods store, Cultures for Health, or order via Amazon – this one is popular and I’ve heard this one is very good too.
- If you haven’t made yogurt in a while, your starter is probably weak. I wouldn’t bother using yogurt that is over a month old, and less than 2 weeks is optimal.
- Kind of milk
- If using raw milk, fresher is better. It’s tempting to make yogurt with milk that’s about to turn, but you’ll probably get a funky consistency. Best to pasteurize and then make yogurt.
- Skim milk (and other reduced fat milks) will always make considerably thinner yogurt. Read about the benefits of full fat dairy first, and if you still insist on using skim, try the gelatin trick here.
- How you finish
- Don’t stir or shake your jars after incubating and before cooling. Just let them be.
- Try putting a jar in the freezer for an hour after incubating vs. just in the fridge. One reader even found that if she let the jars sit on the counter for 2 hours after incubating, she had a wonderfully creamy batch!
Raw milk yogurt notes: Keep in mind that the natural healthy bacteria in raw milk will compete with the yogurt cultures, and raw yogurt is notoriously less thick than pasteurized. Get tips on making raw milk yogurt at this week’s earlier post.
Five “Runny Yogurt” Fixes

1. You can follow the directions to fix runny yogurt with gelatin if you consistently have runny problems. That fix will not help if you already have runny yogurt in the fridge, though, as the gelatin needs to be added when the milk is warm.
2. If you keep your milk hot between 160-180F for 20-30 minutes, according to this helpful post at Cultures for Health, it will break down the milk proteins so they will coagulate better. This really works, but again, won’t help if your yogurt is already runny.
3. Strain it like yogurt cheese – follow the directions in this post but instead of letting it drain all the way to a cream cheese consistency, just stop after 30-60 minutes for a thicker yogurt.
4. Make green smoothies with it.
5. Bake with it, such as pancakes (yogurt usually takes the place of milk just fine) or this soaked baked oatmeal recipe.
Help, My Yogurt is Too Sour!
Longer incubation times typically make for more sour yogurt, but so do higher temperatures. Four hours is sufficient to make yogurt. Experiment with 4, 6, or 8 hours to see what you like. For a while, 6 hours was too tangy for me, but now I love it at 12-16 hours, so don’t be afraid to leave one jar fermenting after you take the others out to see what you think. Add boiling water to keep the temp up after 8-12 hours.
Help, I Broke a Jar!
I’m sorry for your loss.
No really, I am. I hate breaking jars. It happened to me twice this month, so even the yogurt lady guru breaks jars. It keeps me humble. I can’t always pinpoint exactly what went wrong, but here are a few things to check:
- Is your washcloth covering the entire bottom of your pot?
- Are you using high quality jars? Quart jars rated for canning usually do better (but not 100%) than reused store jars.
- Don’t lid your jars while you’re heating them up.
- Don’t let your pot boil like crazy. That’s never a good thing.
Set your timer so you don’t burn the house down. - Start with cold water surrounding the jars instead of hot water.
- If you’re using water in the sink to cool the jars, make sure you put the jars in the empty sink, then add cool water slowly up to half the jar, then add some ice, and cringe. If you’re in that much of a hurry, know that you’re running the risk of jar breakage.
Even if you lose a quart of milk, remind yourself how darn much money you’re saving making homemade yogurt – more than a quart of milk over time!
Help, My Yogurt Smells Like…
…dirt, grass, rotten food…
Uh, yeah. If it smells like anything other than fermented milk (which isn’t incredibly pleasant for everyone, but you should recognize the aroma), trust your nose. Throw it out and start over. You may have grown some extra bacteria on accident (or it’s too old). Be sure to use clean jars and clean hands and utensils.
Troubleshooting Yourself
One of the great beauties of the jar-in-pot method is that you can do different things in the same batch – different kinds of milk, different temperatures or amount of starter. If you’ve got a consistent issue, write down a few fixes and try them on different jars. For example:
- stir in 2, 3 and 4 Tbs. starter into different jars
- start the process at 95F, 100F, 105F and 110F in various jars
- do some raw and some pasteurized
- pull jars at 4, 8, 12 and 16 hours incubation
- incubate in two different places
- store in three different places after incubating – fridge, freezer, countertop
Keep track of your results on paper – it will be worth it to be a little academic about it for a week or two, because once you nail it, hopefully it’s like riding a bike from then on and you won’t even have to think about it.
Need more help?
Remember that there’s an online forum to “ask the teacher” in the Cultured Dairy & Cheese eCourse, where you can see a video of me making homemade yogurt using the jar-in-pot method. For some folks, seeing it in person has made all the difference in building confidence, much like my water kefir video got a lot of people starter with that process.
More FAQs
- Can I make dairy-free yogurt?
- Try this method with almond milk that a reader found, and you can use coconut milk with this jar-in-pot method and a bit of gelatin to thicken. A few more thoughts on that here.
- What about that crockpot method?
- It’s not for me because of the pain of washing that insert…but if you want to try it, many love it! Click for the option to make crock pot yogurt.
- Is there a less complicated way?
- You can also make it even easier, incubating on the countertop if you try a Cultures for Health starter.
- How do you eat this yogurt?
- Here are some ideas for what to do with your plain yogurt.
- What kind of milk should I use?
- That question is answered near the bottom of this post, including info on UHT organic milk.
- I’m still scared!
- Booooooo to you!
Check out 7 Excuses for not Making Homemade Yogurt Denied, including “I don’t have time” and “I work all day.”
- Booooooo to you!
- I strained my yogurt. What do I do with whey?
- Ideas here.
- How long will my yogurt keep?
- At least a month is safe; beyond that, use your nose. Cultured products last longer than fresh milk.
- Can I freeze homemade yogurt?
- Freezing yogurt is FINE as far as keeping the bacteria alive. You can even freeze yogurt in 1 Tbs. portions and use it as a starter for another batch, but sometimes it will be slightly weaker than a brand new, fresh starter.
- The issue with freezing yogurt for eating is its thawed consistency. Once thawed, frozen yogurt separates and is runny, so if you want it for smoothies or just don’t mind a weird consistency, you’ll still get your probiotics, but don’t expect thick, creamy yogurt once you freeze it.
Quick Notes
Just wanted to let you know that there’s a pretty big sale on NaturoKits through this Sunday, over $10 off! If you’ve been interested in trying natural health but don’t know where to start, this first aid kit is for you. Shop here.
Also, “the Berkey Guy” has his new LPC Survival website up, and it’s fantastic. As a longtime KS sponsor, I’m happy to highlight his business – you’ll want to check it out if you’re interested in filtering your water or real food preparedness.
Now you’d better be off to the kitchen to make some yogurt! Think of me while you’re enjoying it….Mmmmmm…
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If you missed the last Monday Mission, click here.
Kitchen Stewardship is dedicated to balancing God’s gifts of time, health, earth and money. If you feel called to such a mission, read more at Mission, Method, and Mary and Martha Moments.
Disclosure: I am an affiliate of Amazon, Cultures for Health, and GNOWFGLINS. See my full disclosure statement here.
This post is supported by MyShopping, where you can find organic spices and herbs and certified green tea at competitive prices.


























A nice comprehensive yogurt troubleshoot page!
I’ve hit the riding-the-bike phase. I’ve finally figured out what works for us and it comes out consistently thick every time. Yay!
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I agonize over any yogurt that I mess up. I just stew over it all day…and then dream about it at night. My main problem? I get in a hurry and add the starter at the wrong time.
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Katie Kimball @ Kitchen Stewardship Reply:
June 2nd, 2012 at 11:48 am
Ah, yes, a good way to practice patience…I’ve been victim of the “hurry up” runny yogurt too!
Katie
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What a killer guide! Thanks so much for all the work you put into this. My yogurt is almost always on the runny side and almost always ends up in smoothies and baked goods. I’ve got some gelatin in the cupboard and plan on giving that a whirl next time I get a runny batch.
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Awesome. I’m sending this post to a friend who had some trouble with her yogurt on a hot day.
Thanks!
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I find that starting with cold water reduces breakage. I think hot water with cold milk stresses the glass.
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Katie Kimball @ Kitchen Stewardship Reply:
June 2nd, 2012 at 11:55 am
Thank you, Katherine – updating both posts now! Good call!
Katie
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I have to mention that I found if I stir or disturb the freshly cultured, warm yogurt in any way, that will ruin my texture and cause the curds and the whey to separate. I am very careful to remove the jars, put the lids on, and move them immediately to the fridge without stirring or disturbing. I let them chill completely before touching them. This has made a difference.
Still need to make yogurt…but don’t have any fresh milk. Tomorrow….
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Katie Kimball @ Kitchen Stewardship Reply:
June 2nd, 2012 at 11:56 am
Kate,
Yes, I forgot that one! Updating now…
Thanks, Katie
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Thanks for being so thorough, and for all your stuff in general. I wish your way worked for me, because the no-dishes thing is just wonderful. Mostly, I don’t have pot(s) big enough to put enough jars in to make yogurt in the quantities that works for me, and I find that heating the yogurt in the jars makes for a lot of scrubbing when they’re empty.
So, not to deflect readers (because, Katie, obviously, you’re awesome!), but if anyone else needs to try a different method, I’ve had good luck with the method Kristen at The Frugal Girl uses (http://www.thefrugalgirl.com/2009/10/how-to-make-homemade-yogurt-2/). It’s fussier (I don’t sterilize though), but I find it’s worth it…I’ve gotten consistently thick yogurt, with no real risk of jar breakage.
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Hi Jenny, Can you use the whey from coconut milk yogurt? If so for what? can you use it to ferment vegetables?Ketchup,potatoes sauerkraut etc ? Thank you Megara
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Katie Kimball @ Kitchen Stewardship Reply:
June 2nd, 2012 at 11:58 am
Megara,
Katie
I’ve really never experimented with coconut milk yogurt, so sorry! If it’s cultured properly, it should be able to be used for all those purposes, but I would check with a fermentation master like GNOWFGLINS.com or the book Wild Fermentation.
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Glad you included about setting the timer when you make it. I forgot I had started a batch of yogurt last week and fell asleep and awoke to the smell of something burning! There was no fire, thank the Lord, but it was a good reminder to set the timer!
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thank you
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Hi – I just tried making yogurt for the first time and unfortunately, I ended up with a pot of whey with a giant cheese curd separated into the middle of the pot. Just wanted to share that I strained some of the whey and they added eggs, sugar, cinnamon, vanilla to make a crustless “yogurt-cheese cake.” It turned out pretty delicious, so if you are wondering what to do with your yogurt fail, that’s one suggestion.
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Hi there! I have made some great batches of yogurt with your awesome instructions! I have a question about buying a starter. For some reason I’m having a hard time finding a small cup of plain non fat yogurt. Can I use plan non fat Greek yogurt as a starter? I tried today and it didnt come out and sorta smelled funny but I’m hoping my mistake was rushing or not checking the temp (today was not the day to make yogurt but I did it anyway) . If I am forced to buy a large tub of plain yogurt can I freeze it in small batches to use for starter?
Thanks again for your time!
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Katie Kimball @ Kitchen Stewardship Reply:
September 5th, 2012 at 11:21 pm
Melissa,
Yes to both! Yogurt freezes fine and retains the live bacteria; I recommend freezing in 1 Tbs. portions for easy yogurt-making.
Also, Greek yogurt often makes great yogurt.
Any plain (or even sweetened, I hear) yogurt will work. Enjoy!
Katie
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I just made yogurt (cultured overnight in the oven with pilot light) but forgot to take it out the next morning. It was “culturing” for about 41 hours before I remembered it. It smells and tastes fine. Nice and tangy. Do you think it’s still okay to eat? Thanks!
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Katie Kimball @ Kitchen Stewardship Reply:
October 10th, 2012 at 1:38 pm
Jen,
If it was at the right temp for that long, I’d feel better about it. I can’t say I’ve ever let it go more than 24 hours though! Trust your nose…
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Tried to make yogurt for the first time – used grass fed whole milk and three different types of starters in the various jars. I just went to check it after four hours and it is still like milk. Thoughts?
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Katie @ Kitchen Stewardship Reply:
January 7th, 2013 at 1:28 am
Lynne,
Katie
There are so many factors, but basically if it is still totally liquid and no yogurt smell, you probably got the temp too high and killed things, or radically too low and nothing could propagate. I hope you figure it out for next time!
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Hi, my yogurt turnes out fizzy, is there any way of rescueing it? cheers
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Katie Kimball @ Kitchen Stewardship Reply:
February 4th, 2013 at 2:54 am
Maren,
Katie
Fizzy as in little bubbles, like carbonation? I’ve never had that happen. Maybe you over-whisked the starter in? Ultimately, if it still smells like yogurt, you had some fermentation happening. If it acts liquid like milk, you can either start over with boiling it or just use it in baking. Sorry I took so long to find your comment; it came in just before my book launch and I was absolutely swamped.
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When I heated my raw milk on the stove top (to pasteurize it myself to 180) it got very chunky. Is this normal? I’m currently cooling it to 90-110.
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Katie Kimball @ Kitchen Stewardship Reply:
March 11th, 2013 at 1:39 am
Kaitlyn,
I’m wayyyy too late to help, but I’ve only seen that happen when there’s already yogurt in it…so if you just had raw milk, I’m guessing it was starting to “clabber” either from being at room temp too long or being old. ??? Katie
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I made my first batch of yogurt and didn’t realize I shouldn’t stir it before it set. It completely separated. Can I use The thick part that is left for anything?
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Katie Kimball @ Kitchen Stewardship Reply:
March 21st, 2013 at 11:33 pm
Brie,
I would recommend separating the whey and thick yogurt – anything thick is yogurt! Ideas for how to use whey here: http://www.kitchenstewardship.com/2009/12/02/what-is-whey-where-can-i-get-it-how-to-make-yogurt-cheese/
Hope it goes more smoothly next time! (bad pun)
Katie
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I tried checking to see if this question was already asked. i made yogurt twice and it came out runny… i set the temp in the oven so chances are either i stirred in the starter too hard and/or didn’t add enough. My question is… if it didn’t turn out (it’s pretty much still milk), can I use that same batch and just do it all over again?
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Kaitlyn Reply:
March 18th, 2013 at 9:41 pm
Same thing has happened to me. Didn’t seem to ferment at all and looked liked milk at the end of the process. I chose to throw it away since I couldn’t be sure that the right kinds of bacteria were still there. Better safe than sorry?
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Katie Kimball @ Kitchen Stewardship Reply:
March 21st, 2013 at 11:32 pm
Audrey,
Katie
I’ve had this happen before, but usually if it truly still looks like milk, you started too hot or it got too hot and didn’t culture at all because the bacteria were killed. Stirring too hard won’t cause this problem. Because there’s a little bit of yogurt in there, reheating it usually causes some weird separation and it’s not a great base for new yogurt. I just use it on cereal OR better, cook with it, like a creamy soup or rice pudding. Then you can make sure you boil it to set your mind at ease about bacteria. Good luck next time!
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