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Gluten Free Soft Pumpkin Cookie Recipe

Fall is here and so are pumpkins! I love stuffing these nutritious veggies into cookies and more. This sugar-free gluten-free pumpkin cookie recipe is a big hit in the Kimball household.

gluten free pumpkin cookies

What’s 10 tablespoons divided by (7×12) cookies?

Got your Math brain on?

I’m running on even less sleep than usual since the arrival of our latest sweet bundle, Gabriel Thomas, two weeks ago today, but even so I think I’ve got a great solution to that problem:

These pumpkin cookies are not only free of gluten, but have only about 1/3 teaspoon of sweetener per cookie (honey). That’s less than I used to squeeze into my homemade yogurt!

I think it’s fair to say that these cookies are healthy, since they use mostly whole grains, get some vegetables in there and have even less sweetener than even a healthy muffin or granola bar, easily.

You might even get away with serving them for breakfast, much to the delight of your children, I’m sure.

When I bring these cookies to parties and events, either the new gluten-free version I’m sharing today or our previous ultra-favorite 100% whole wheat pumpkin cookies, children and adults alike love them. I’m often asked for the recipe, the ultimate compliment to the cook!

There’s something magical about the honey that makes the cookies fluffy and light, and the pumpkin puree and autumn spices add enough of an undertone that tells your palate “sweet” that no one realizes how little sweetener there actually is!

Real Food Progressive Holiday Feast

This is my contribution to the #realfoodholiday progressive feast – a dessert you can share anywhere you go!

But it took some experimenting to get it right…

Gluten-Free Transformations

I ‘fessed up in this gluten-free pumpkin muffins recipe that for a number of years, I was quite intimidated by gluten-free baking.

I didn’t seek out GF recipes to try because they seemed complicated, had too many flours or weird binding agents or seemed like such a step down nutritionally from the soaked 100% whole wheat baked goods our family was used to that it didn’t seem worth it to bother. I stuck with coconut or almond flour and called it good.


I had a little breakthrough via Kimi Harris’s mini eBook about gluten-free muffins (available as a bonus with The Healthy Lunch Box!) and finally got up the guts to start experimenting with making our old favorites gluten-free.

It worked!

RELATED: Healthy gluten-free cupcakes for breakfast


I’m thrilled to share a FREE gluten-free cheat sheet mini eBook to help get you started! This is perfect if you’ve just been told you need a GF diet, if you have a friend or family member eating GF and you’d like to cook for them, or if you’re just curious what it’s all about!

The homemade gluten-free flour blend I use is mostly made up of whole grain flours with about 25% arrowroot starch, a fairly healthy starch as they come:

Homemade Gluten-Free Flour Blend

It’s easy to mix up a batch. Just pour the following into a gallon plastic bag (or any container) ingredients found on Amazon:

It has worked successfully for the pumpkin muffins (along with other GF variations; that recipe just cannot be foiled!), these soaked GF pancakes, my homemade crackers, and now, these cookies. I’m thrilled to share the new and improved recipe with you today – and believe me, we’ve put it through plenty of testing (yum). Winking smile

Gluten-free cookies so soft and fluffy you'll never believe they're so healthy too - less than half a TEAspoon of honey in each cookie! Kids and adults alike love them

Test No. 1

For the first round, I simply used my gluten-free flour blend 1:1 in place of the whole wheat flour.

Unfortunately the result was quite crumbly (I brushed the crumbs off the plate in the photo above, ha!) and tasted flour-y or grain-y. They were doable, but not a completely pleasant mouthfeel.

Test No. 2

From the original whole wheat version, I doubled the eggs and added 4 teaspoons whole psyllium husk to add some more “stick togetherness” since batch no. 1 was soooo crumbly. It was considerably better – success – but still not as good as I knew they could be.

I thought if I could find my psyllium husk powder that might be more suited to helping the situation, and I also pondered using slightly less flour or trying a rest in the fridge to allow the flours to soak up the moisture in the mixture.


I did make the original whole wheat version at the same time to double check my honey measurement, which has decreased more and more since Smart Sweets was published three years ago.

They seemed grainy and quite crumbly too!

That got me thinking, and I remembered that the puree I had used for all three batches – a mixture of butternut and kabocha squash – was very, very thick. The squash had cooled off completely before I scraped them out and also perhaps could have used 15 more minutes of bake time. Maybe the puree was my only problem after all…

Test No. 3 and 4

With new puree (butternut and pie pumpkin mixture) that seemed much more moist and what I’m used to, I made a batch with 6 teaspoons psyllium husk powder to test that theory and another batch with about 1/2 cup extra pumpkin puree added to the dough.

Here are the results:

Gluten-free pumpkin cookies with butternut squash

In front – with added psyllium husk powder.

Gluten-free pumpkin cookies

The darker version: Additional 1/2 cup pumpkin plus some extra spices


Total success.

I just had bum puree on the first tests! (phew)

In fact, they are SO much better that my kids went from thinking they didn’t like pumpkin cookies to asking for seconds – which I could happily allow since they’re so good for you! I may have been tasting them all morning myself…just for you…it’s a real sacrifice. Winking smile

I tested the extra spices after feedback from my amazing site editor, Helen, who tested them out for me using Bob’s Red Mill Gluten-Free 1 to 1 Baking Flour and canned pumpkin. Her family gobbled them up and reported them as “pillowy and delicious” and not crumbly at all – and she doesn’t even like pumpkin!

Gluten-free pumpkin cookie ingredients

Her husband’s only tweak would be to add more spices, so if you’re a lover of autumn spice (or have old and perhaps less potent spices), add an extra teaspoon of cinnamon and a 1/2 teaspoon of cloves. YUM. The original spices are perfect for most people, however, FYI.

Recipe for Gluten-Free Soft Pumpkin Cookiessugar-free pumpkin cookies have a mere third teaspoon honey per cookie

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Gluten Free Soft Pumpkin Cookie Recipe

5 Stars 4 Stars 3 Stars 2 Stars 1 Star 5 from 2 reviews
  • Author: Katie Kimball
  • Prep Time: 15 mins
  • Cook Time: 15 mins
  • Total Time: 30 mins
  • Yield: 67 dozen 1x
  • Category: Dessert


Soft, gluten-free pumpkin cookies that you know are healthy – but no one else will guess. Bring them to any party and you won’t bring any home!


Units Scale

ship kroger


  1. Preheat Oven to 350°F.
  2. Cream fat and honey.
  3. Add pumpkin, eggs and vanilla; beat well.
  4. In a separate bowl, whisk together flour, baking powder, baking soda, cinnamon nutmeg, allspice, and salt (Use the code kitchenstewardship for 15% off of your first purchase). (Sometimes I cheat on this and just add the dry ingredients on top of the wet, all together, then mix. It works too!)
  5. Add dry mixture to the batter; mix well.
  6. Stir in chocolate chips.
  7. Drop rounded teaspoonfuls two inches apart on a lightly greased cookie sheet or ungreased baking stone. I don’t have a fancy cookie scoop (found on Amazon), so I actually use two regular spoons. The cookie dough would probably measure 1.5-2 tablespoons. If you have a metal spatula and stainless steel cookie sheets (also on Amazon), you don’t have to grease them up either.
  8. Bake for 15 minutes.
  9. Cool 2-3 minutes on the pan before removing to a wire rack to cool completely before storing. I won’t tell if you taste one while they’re hot…


*Use refined coconut oil (use the code STEWARDSHIP for 10% off at that site!) unless you’re willing to have a hint of coconut flavor in the cookies. Unrefined works fine too though, as does any mixture of the options for the fat.

**If your puree is very dry, add a bit of water to the puree to loosen it up OR add another 1/4-1/2 cup puree to the cookies. The more moisture you add, the more “cake-y” the cookies will feel. The puree should look at least as moist as canned pumpkin (see photo below) and can be slightly more moist. Canned pumpkin works as well – just dump in a 15-oz. can and you’re good to go.

If you’re a huge fan of autumn spices, add an additional teaspoon of cinnamon and a 1/2 teaspoon (or whole teaspoon) of cloves.

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To help you out, the puree should look about like this:

Gluten-free pumpkin cookie batter

And the cookie dough should be a bit less thick than your average chocolate chip cookie dough.

Like the KS Style?

I’m always testing, tweaking, and keeping it real around here. The mission of Kitchen Stewardship® is to help you balance your family’s nutrition with your budget, time and care for the environment – all without losing your sanity.

I’m just a mom of four trying to hold it all together and being honest about how we do it, taking one baby step at a time and giving grace to wherever you are on your real food journey. If you dig that, I’d love to see more of you – sign up for the KS monthly newsletter and get a free eBook and making gluten-free cooking easy, whether you need to try a GF diet or just want to share a meal with someone who has that dietary restriction:

How to Cook Gluten Free for Beginners

#realfoodholiday Bloggers

Over the past week, this fabulous group of bloggers has been sharing recipes and ideas to help you enjoy a Real Food Holiday!

More from KS

Are you a binger or cringer? Do holidays tip the scale away from your 80/20 balance? Or do you shy away from celebrations in fear of the “unknown yellow casserole?” Incorporating real foods into holiday celebrations isn’t as difficult as you think. This list offers ideas for celebrating the holidays without being a scrooge… or a pumpkin.

Other Pumpkin Recipes:

Other Fall Recipes:

Unless otherwise credited, photos are owned by the author or used with a license from Canva or Deposit Photos.

16 thoughts on “Gluten Free Soft Pumpkin Cookie Recipe”

  1. Can’t wait to try these but, on another topic, may youngest child’s name is Gabriel Thomas :0)

  2. Helen @ Kitchen Stewardship

    Hi Nicole,

    yes – I find the measurements easy to halve. Definitely give it a go! They do freeze nicely though, if you have too many 😉

  3. could you half this recipe with the same results? We don’t need 6 dozen of these but I am anxious to try!!

  4. I followed directions exactly but when I added the pumpkin to the coconut oil it hardened up so much I couldn’t mix it. I used fresh, but chilled, pumpkin puree. Next time I’ll remember to use all room temperature ingredients. I had to heat up the oil/honey/pumpkin mix to get it to blend. Now my batter is runny and sitting in the fridge to hopefully thicken up a bit before cooking. On the bright side: the batter smells delicious!

    1. Helen @ Kitchen Stewardship


      Whoops! yeah it helps to use all room-temp ingredients when using coconut oil. Hope it turns out for you! 🙂

    2. Katie Kimball @ Kitchen Stewardship

      I hope it works out! That’s a common problem with coconut oil – I tend to try to mix everything up FAST when I add the oil and make sure I add it last. Hazard of real food baking I guess!
      🙂 Katie

  5. These look great! Just wanted to double check – you don’t need the psyllium husks after all? My GF Blend doesn’t have any added gums.

    1. Katie Kimball @ Kitchen Stewardship

      Yes, that’s correct – the psyllium husk didn’t hurt but didn’t make enough of a difference to bother, especially since that’s a “different” ingredient that can scare people away from a recipe. No gums or binders needed! Enjoy! 🙂 Katie

  6. Can you use regular flour or wheat flour to for this recipe? It looks good I want to make it now. Or is it totally gluten free only?

    1. Helen @ Kitchen Stewardship

      Hi Melissa,

      I’d stick with GF flours here – it has been modified from the original wheat recipe:

    1. Katie Kimball @ Kitchen Stewardship

      Nicole, No, I didn’t – cookies are the hardest thing to “soak” because there’s rarely any liquid beyond the eggs. So sometimes you just say “c’est la vie!” If you really couldn’t handle grains w/o soaking, you’d have to use sprouted flours.
      🙂 Katie

  7. Helen @ Kitchen Stewardship

    Are you calling my spices old?? 😉 I had to stash these in the freezer so I wouldn’t eat them all!

    1. Katie Kimball @ Kitchen Stewardship

      LOL, I only know that spices get dull when they’re old because I keep them for YEARS. 🙂 Katie

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